Setting python version as default on Linux
If you have a later version than 2.6 you'll need to set 2.6 as the default Python. Later versions would be 2.7 and 3.1; see what you have by typing python -V at the ter...2083 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like to d...1958 days ago
1849 days ago
List of perl special symbols !
There are some variables which have a predefined and special meaning in Perl. They are the variables that use punctuation characters after the usual variable indicator ($,...1572 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is de novo genome assembly?The method of taking a large numbe...1218 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes, standal...651 days ago
725 days ago
682 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis. Here a...437 days ago