Results for "Command Line"
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Taverna Workflow Management System
...a Workbench(the desktop client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of...3916 days ago
- ...iff* EdgeR* DESeq2 Advanced Command Line Tutorial Graphical Output wi...meRbund introduces some basic commands using the cummeRbund package...y variants in VCF format Pipelines are for those who are comfortable with using the UNIX command line; and often allow more...
3654 days ago
Ten recommendations for creating usable bioinformatics command line software
...tics software varies greatly in quality. In terms of usability, the command line interface is the first experienc...st time a tool will be used. Here I present ten recommendations for command line software author’s tools...3620 days ago
UCSC Genome Browser and Blat software !
...s Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux a...determine which set of binaries to download, type "uname -a" on the command line to display your machine type....3000 days ago
- Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-spe...
2929 days ago
- DarkHorse is a bioinformatic method for rapid, automat...sequences, then using these matches to calculate a lineage probability index (LPI) sc...brief tutorial page is also available on-line....
2875 days ago
Linux command line exercises for NGS data processing
...analysis as well as giving experience in writing one-liners. Copy the required files to yo...often to manipulate NGS data as compared to the other command line tools such as grep, sed, perl etc. Furthermore, having a command on awk will make it easier...2875 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it al...
2868 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for b...2628 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on&...for viral metagenomics. virmet is called with a command subcommand syntax: virmet fetch --v...m A short help is obtained with virmet subcomm...
2765 days ago
