Results for "Command Line"
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List of Bioinformatics and Computational Biology Journals
Hi Bioinformatician and Computational Biologist, this is the comprehensive...informatics Applied Genomics and Proteomics BMC Bioinformatics Online Journal of Bioinformatics (OJB) PSB On-Line Proceedings Bioinformatics:...3728 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book....thing that we know today. There are several book, online and offile to read and I can'...oach, I.F. Tsigelny, 2002, International University Line Introduction to Protein Arch...3918 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...vo transcriptome assembly pipeline from stranded RNA-Seq reads. Mar...[describes Trans-ABySS, a pipeline to use the ABySS parallel assemb...43(5):491-8, 2011. PubMed Online resources The R statistical...wk tutorial Executing an awk command from R to simplify data ex...3780 days ago
List of In-silico Binding Site Prediction Tools
...graphy of proteins (CASTp) provides an online resource for locating, delineating and measuring concave su...rget structures. PocketDepth: http://proline.physics.iisc.ernet.in/pocketd...g language and is currently available as command line driven program. A GUI is in d...3744 days ago
Perl one-liner for bioinformatician !!!
...nowing a little bit of Perl onliner is extremely helpful. Perl one-liners are small and awesome Perl...mber and print only non-empty lines in a fileperl -pe '$_ = ++$a...s|\n|\r\n|' #Convert unix new lines into DOS new lines:perl -pe...wize.wordpress.com/2012/06/15/command-line-magic-for-your-gene-a...3629 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,...
3549 days ago
- ...y dropped into the middle of a pipeline for format conversion. Reformat...of reads or bases) Changing fasta line-wrapping length Reverse-compl...2. This is equivalent to the above command: reformat.sh in=x#.fq out=...Xmx2g". For example, to change the line-wrapping length on the human...
2714 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...SRA and other NCBI resources; command-line or via web, can fetch data from a URL, build custom pipeline/ workflow has sra.dnanexus.com s...are, or download analysis pipelines for automated and repeatable an...glfMultiples Description: command-line, variant caller Input: GLF...2909 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's s...s RetrotransposonsNon-Retrovirus Retrotransposons ( LINES ) Currently up to 50% of th...ations in group Nucleic:repeats). There are many on-line services providing the EMBOSS...2212 days ago
- Linux Commands Cheat Sheet ...e — output the first 10 lines of file tail...le — output the last 10 lines of file tail...nbsp; alias name 'command' — create an alias for a command System&n...
2874 days ago
