Results for "Command Line"
Top-level pages
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...lustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of...s in real-time (v1.1 and above) by accessing source databases. With command-line versions of tools, as you kno...2891 days ago
- ...d or reverse strand of the genome. A useful online utility decodes a single SAM fla...M Format. SAMtools: widely used, open source command line tool for manipulating SAM/BAM...distribution also includes bcftools, a set of command line tools for identifying...
2889 days ago
Genome Assembly Tools and Software - PART1 !!
...Complexity ARC is a pipeline which facilitates iterative, ref...affolding TransPS is a pipeline for post-processing of pre-assem...any stage of an assembly pipeline to automatically break incorr...ukaryotic datasets. The command-line Perl script and addit...2705 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a pro...found (get first character on the line) set can't-be-ascending...ntf (Appropriate message 1 and skip a line) add 1 to consec t...se listed items are to be on separate lines with spaces in between each...2679 days ago
Perl Special Vars Quick Reference
...ne variables. @ARGV The command-line args. Regular Expressions...d Separators $. Current line number (or record number) of mos...ge length. $- Number of lines left on page. $~ Forma...'t try to open the file. Command Line Args ARGV Filehandle it...2664 days ago
Awesome perl frameworks, libraries and software - PART 1
...utomation tool for Ragnarok Online hachiojipm/awesome-perl -...nteractive console text-based command-line Twitter client written in Perl...;- A Perl module and terminal command for generating secure memorab...g site pssc/squeezy - A command-line utility for controlli...2509 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears simi...nimals is to suggest that the lineage(s) leading to sponges diverged from the lineage that gave rise to all othe...deration. The points at which lineages split represent ancestor...ng organisms; the patterns of lineage branching produced by the...2482 days ago
Tools for bacterial whole genome annotation
...okka – Standalone command line tool, takes just a few minute...Prokaryotic Genome Annotation Pipeline is designed to annotate bacte...prokaryotic genome annotation pipeline that combines ab initio&...onfigurable genome annotation pipeline. MAKER allows smaller eukaryo...2351 days ago
- There are several ways you can conve...n be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the...a Using PASTE You can linerize every 4 lines in a tabular format and prin...
2325 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double sp...ex/' # Number and print only lines that match a patternperl -ne...he sum of all the fields on a lineperl -MList::Util=sum -alne 'p...ngperl -le 'print length "one-liners are great"' # Find the num...e first field (word) of every line (emulate cut -f 1 -d ' ')perl...2322 days ago
