NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at...hical user interface, a web service at http://nanoplot.bioinf.be and comma...2095 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath...d like to use multiple threads, then the following commands can generate 20 threads to r...ntigs.fasta or raw_reads.fasta using the following comma...2086 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of long reads the size of which ca...2069 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a comma...2064 days ago
nQuire: a statistical framework for ploidy estimation using next generation sequencing
nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely...here intact nuclei are not preserved. It is implemented as a stand-alone Linux comma...2041 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via comma...2020 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal be...run of Synima – and can be subsequently edited. Synima runs quickly on a comma...2015 days ago
BamView: a free interactive display of read alignments in BAM data files
To run the application on UNIX from the downloaded jar file run the UNIX:...a -mx512m -jar BamView.jar and extra command line options are given when '...-h BAM files can be specified on the command line with the '-a' option: j...If a BAM filename is not given on the comma...2005 days ago
2005 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental desig...hat may consist of up to 10 million markers and 10,000 samples from replicable lines or hybrids. GWASpro provides...1977 days ago