PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...ogous gene families in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" fo...problematic, as the modern deluge of sequencing data means that comparative genomics analyses could be performed o...1374 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt...1365 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
...nments to Ka/Ks calculations and synteny. The new R package targets ecology, population and evolutionary biologists working in the field of comparative genomics.1283 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fund...n the analysis and interpretation of experimental genomics data. It will be structured a...d analysis strategies that underlie computational genomics research. The primary go...1242 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas ...1242 days ago
1227 days ago
gggenomes: A grammar of graphics for comparative genomics
gggenomes is a versatile graphics package for comparative genomics. It extends the popular R visualization packageggplot2 by adding dedicated plot functions for genes, syntenic regions, etc. and verbs to manipulate the plot to, for example, quickly zoom in into gene neighborhoods.1202 days ago
Kmer: a suite of tools for DNA sequence analysis
More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparat...1004 days ago
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