Introduction to Bioinformatics
Introduction to bioinformatics is a course for biologists and clinicians that would like to learn more about the way bi...course covers many of the topics transformed by the emergence of big data and compu...1789 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readth...1338 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 2025.&nbs...tion sequencing technologies; and bioservices services, including bioservices tools, pipelines and workflows, com...1253 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant call...Cheng @Yuanyuan929)● svpack – tools for filtering, comparing, and...e-stellar-science-career-advice-and-bioinformatics-tools-at-smrt-leiden-2021/986 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly m...occur. Mis-assembly checking and assembly metric tools:QUAST - Quality assessment to...ween genomes from read mappings. Genome finishing tools:Semi-automated gap fillers:Ga...1198 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related P...is used, for example, in the development of source codes, standalone software/tools, and algorithms in bioinforma...631 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the othe...For i-ADHoRe, you need to register at http:// bioinformatics.psb.ugent.be /webtools/i-adhore/licensing/Agree to t...1149 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Br..., W. S. & Berriman, M. Nucleic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map format and SAMtools. Li, H. et al. Bioinformatics...1041 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat)...ie 2) Sort and index alignments (SAMtools) Primer sequence removal (iV...nal) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon co...ntersect variants across callers (BCFTools) De novo assembly Primer...871 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S., CoMeta: Classification of Metagenomes Using...857 days ago