kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more...sp;can quantify 30 million human reads in less than 3 minutes on a Mac desktop comput...1959 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and pr...nspiration tools are written in Java, therefore can be used practically on any comput...1946 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with...1518 days ago
1432 days ago
parallelLastz: Lastz with multi-threads support.
Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for single computer with multiple core processors. When the query file format is fasta, you can specify many threads...1366 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fundamental concepts and exper...esearch. The primary goal of the course is for students to be grounded in theory and leave the course empowere...1243 days ago
Introduction to phylogenies in R
R phylogenetics is built on the contributed packages for phylogenetics in R, and there are many such packages. Let's...RAN version of these packages, you will need to have R 3.3.x installed on your comput...950 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
VCF2PopTree is a client-side software written in Javascript and it runs purely within the user’s comput...877 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based...ation between predictions and B-factors). The environment consideration in ANM theory was published (1) and reviewe...853 days ago