MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populat...ive models (selective sweeps, polygenic adaptation, epistasis). MimicrEE2 runs on any comput...2042 days ago
2028 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It...led reads not the raw fast5 files (which Deepbinner requires). You have a small/slow comput...1982 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted for in the linear mixed model (LMM). G...1972 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data...tribute new releases of IGB as compiled code (igb.zip) you can use to run IGB on your comput...1946 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell R...isto can quantify 30 million human reads in less than 3 minutes on a Mac desktop comput...1940 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting...rties needed in QSAR, molecular modelling and drug design, hi...in Java, therefore can be used practically on any computer platform....1928 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple...nce alignment algorithm for protein sequences. The design of MSAProbs is based on a com...r shared-memory CPUs by employing a multi-threaded design, and further parallelized for...1757 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data co...s work, we explore the use of hardware/software co-design and hardware acceleration to...een two given sequences. The second key idea is to design a hardware accelerator design...1640 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with...1500 days ago