Results for "Configuration"
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CovCal: Coverage / Read Count Calculator
...Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then select...2163 days ago
- ...as a common thread for the manual improvement of scaffolds. Description WiseScaffolder includes 4 subcommands: dumpconfig generates a configuration file that notably specifies t...
2850 days ago
- ...ly summarize individual sequencing runs. The dashboard groups samples in dropdowns for navigation among the data sets, utilizes human-readable configuration files to manipulate the pages...
1269 days ago
SeqMule: Automated human exome/genome variants detection
...popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule also has some b...2612 days ago
- ...SVG (Scalable Vector Graphics) format. Requires only a single configuration file whose layout mirrors that of the figure itself. Predefined configuration files and "track" types are s...
2502 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
...ad_batch_size N. Better compressed intermediate files. Added utilities folder. Added support for multiple short read files. Removed use of configuration file....2064 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...es, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own configuration of the ‘Information Edi...1797 days ago
- ...statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of...
1545 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file.1535 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualiz...1043 days ago
