Results for "Construction"
Top-level pages
...equence alignment, protein 3D structure alignment, phylogenetic tree construction, prediction and classificatio...introduction of PsiBLAST [3]; studying evolutionary aspects, by the construction of phylogenetic trees from th...3944 days ago
Phylogenetic for Bioinformatics
...mporia.edu/mooredwi/nathist/chap1.htm Algorithms for Phylogenetic Reconstructions:http://lectures.molgen.mpg.d.../teaching/SBseminar/manual.pdf Web sites providing software for the construction of phylogenetic trees BioE...3943 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...mp; Birney, Nat Methods 6(11 Suppl):S6-S12, 2009. Full Text Library construction and experimental design Stat...e duplication. Amores et al, Genetics 188(4):799-808, 2011. PubMed Construction and application for QTL analy...3776 days ago
Commercial and public next-gen-seq (NGS) software
...Analysis for ChIP-Seq. MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it t...3516 days ago
Using Interval Trees to Query Genome Annotations by Position
...query-genome-annotations-by-position/ http://hackmap.blogspot.de/2008/11/python-interval-tree.html http://en.wikipedia.org/wiki/Interval_tree#Construction3546 days ago
Software packages for next gen sequence analysis
...Analysis for ChIP-Seq. MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it t...3239 days ago
Comprehensive list of visualization tools for biological pathways
...BioCyc pathways (collection of 5500 pathway/genome databases) http://www.biocyc.org/ Pathway Explorer Interactive Java drawing tool for the construction of biological pathway diagram...2284 days ago
Genome Assembly Tools and Software - PART1 !!
...thod for the efficient and robust de novo reconstruction of transcriptomes from RNA-Se...ene assembly, homology-guided overlap graph construction, and careful graph traversal....iguity 1.0.4 – Contig Adjacency Graph Construction and Visualisation Contigui...2683 days ago
List of visualization tools for network biology
...tions http://tulip.labri.fr/TulipDrupal/ VANESA Automatic reconstruction and analysis of biological ne...ttp://agbi.techfak.uni-bielefeld.de/vanesa/ VANTED Network reconstruction, data visualization, integrat...2285 days ago
