BIMA V3: an aligner customized for mate pair library sequencing
...ost NGS alignment programs. Large insert sizes, introduction of library preparation protocol artifacts (biotin junction reads, paired-end read contamination, chimeras, etc.), and presenc...2701 days ago
2620 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Microdissection for SNP calling; Java based; for disease-control matched samples; uncovers SNPs with low allele frequency by considering alpha contamination Input: BAM (must be sorted a...2911 days ago
Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
...an elaborate pipeline that aligns reads, filters poor-quality matches, computes coverage metrics, identifies variants, checks for sample cross-contamination, and emails quality reports -...3015 days ago
1471 days ago
2078 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...oduced. Does the kmer content look good to you? How much of the kmer “noise” is part of the final assembly? What do you think contamination would look like in the kmer p...1339 days ago
2140 days ago