BIMA V3: an aligner customized for mate pair library sequencing
...ost NGS alignment programs. Large insert sizes, introduction of library preparation protocol artifacts (biotin junction reads, paired-end read contamination, chimeras, etc.), and presenc...2691 days ago
2610 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA s...rt sequence fragments. They revealed a number of probable bacterial contaminations as well as hybrid scaffolds...2348 days ago
2167 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
...ina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produc...1992 days ago
1937 days ago
Predict Gene Ontology with sequences !
...karyotic proteomes in an hour. You can use AAI-profiler to summarize a proteome's species neighbors and reveal taxonomic identity or contamination. http://ekhidna2.biocenter.h...1390 days ago
1354 days ago
1342 days ago
OMArk: software for proteome (protein-coding gene repertoire) quality assessment
...proteome completeness, characterizes the consistency of all protein coding genes with regard to their homologs, and identifies the presence of contamination from other species. OMArk rel...66 days ago