Results for "Contig"
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Multi-CAR: a tool of contig scaffolding using multiple references
...one called Multi-CAR such that it can utilize multiple complete genomes of related organisms as references to more accurately order and orient the contigs of a draft genome. In practi...2252 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
...lignGraph is a software that extends and joins contigs or scaffolds by reassembling...nGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa --genome genome.fa...tanceLow --distanceHigh distancehigh --extendedContig extendedContigs.fa --remainin...2210 days ago
MIX: Combining multiple assemblies from NGS data
...a reference genome and has the goal to reduce contig fragmentation and thus speed-...graph where vertices represent extremities of contigs and edges represent existing...extension graph that maximizes the cumulative contig length. The Mix algorithm, a...2189 days ago
- ...ke prediction strategy for assembling reads to contigs and scaffolds. Instead of using single-end reads to construct contig, PERGA uses paired-end reads...n 99.7% of cases. PERGA will try to extend the contigs by all feasible nucleotides...
2161 days ago
HALC: High throughput algorithm for long read error correction
...tion. HALC aligns the long reads to short read contigs from the same species with a...ong read region can be aligned to at least one contig region, including its true ge...can thus result in 11.4-60.7% longer assembled contigs than the existing algorithms...2158 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
...leased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome...n to iteratively increase the size of existing contigs. Initially, those contigs ca...technologies that provide non-paired data, or contigs that were output from a prio...2156 days ago
- GMcloser uses likelihood-based classifiers calculated from the alignment statistics between scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to gap regions of scaffolds, ther...
2155 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...ee of heterozygosity. This causes contigs for both haplotypes of that...be assembled as separate primary contigs, rather than as a contig and...loid assembly. Identify pairs of contigs that are syntenic and move o...gnment of any remaining ambiguous contigs. The pipeline will run on ei...1966 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
...ovo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an identified...sembly and will generate a new fasta file containing both the corrected contigs and the correct, unaffected...1928 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...nbsp;bioRxiv 2019. RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes via m...ine with SV calling takes ~2 minutes. Intact ordering and orienting of contigs. Chimeric contig correction...1845 days ago
