CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, zoomable maps of circular genomes....mples of the various output types, see the CGView gallery. http://wishart.biology.ualberta.ca/cgview/gallery.ht...2158 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and c...sification using targeted short read sequencing.” Source Code for Biology and Medicine, 11, 13. do...2108 days ago
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Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev... The Biotite package bundles popular tasks in computational biology into an unifying framework, w...1977 days ago
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EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequenc...from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract)...1960 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interac...Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed]&nbs...1944 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch all the skills needed to setup a fully working Linux web server and to develop an...1653 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly...1622 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because of...models, and Bayesian networks) for biological sequence analysis and systems biology. Other machine learning techn...1598 days ago