Results for "Copy-Number"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies. Installing Perl modules manually by resolving all the...3957 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make sense of it, biologically. But, most of the newbie bio...3714 days ago
- +37 more Blogs
Bookmarks
- Did you ever need to look up a number like the volume of a cell or the cellular concentration of ATP, only to find yourself spending much more time than you wanted o...
3915 days ago
- Chromosome number is a remarkably dynamic feature of eukaryotic evolution. Chromosome numbers can change by a duplication of the whole genome (a process termed polyploidy...
3395 days ago
- +118 more Bookmarks
Files
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3875 days ago
- Randomness and Probability Randomness and probability are two differnet concepts: probaility is a measure (according to measure theory) which measures the randomness. Ra...
1621 days ago
Discussion topics
- The key to finding a solution is to notice that most genomicsequences differ by very little. It may well be that the number of complete genome sequences being stored...
3927 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that can...3955 days ago
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced functional programming with imperative programming Ruby is a dynamic, reflectiv...
3954 days ago
- +12 more Pages
Top-level pages
- An algorithm is a computable set of steps to achieve a desired result. We use algorithms every day. For example, a recipe for baking a cake is an algorithm. Most program...
3953 days ago
- Genomics is the study of the genomes of organisms. The field includes intensive efforts to determine the entire DNA sequence of organisms and fine-scale genetic mapping e...
3949 days ago
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Wire posts
News
Barber pole worm , sheep pathogen sequenced !!!
Haemonchus contortus is a highly pathogenic parasitic nematode of that can infect a large number of wild and domesticated ruminant species and is the most economically im...3904 days ago
OSDDlinux : Computational resources for drug discovery
Open Source Drug Discovery (OSDD), a mission to provide affordable drugs for poors, is in the process of creating an in silico plateform for designing, discovering and si...3885 days ago
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Opportunity posts
- van Noort Group is looking for PhD fellows We currently access an unprecedented knowledge on the basic components making up living systems. An ever growing number of n...
3956 days ago
Bioinformatics PhD studentship available in New Zealand
Bioinformatics PhD studentship available in New Zealand The importance of transcriptional control has been explored in a burgeoning line of research over several decad...3955 days ago
- +95 more Opportunity posts
ResearchLabs posts
- Genome sequencing projects have enormous potential for benefiting human endeavors. However, just as acquiring a language's vocabulary does not enable one to speak it, dat...
3892 days ago
- The Pandey Lab at Johns Hopkins University is a Systems Biology lab that combines molecular biology, analytical chemistry and computational biology with various "Omics" t...
3887 days ago
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Fun
Golden Rules of Bioinformatics
All constant are variable. Copy and paste is a genetic error. First solve the problem, then write the code. No matter what goes wrong, it will probably look right....3923 days ago
Video
How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA, but different cell types use it differently. Transcription Factors help influence which genes are used in whic...3902 days ago
- Air date: Wednesday, January 04, 2012, 3:00:00 PM Time displayed is Eastern Time, Washington DC Local Category: Wednesday Afternoon Lectures Description: There i...
3880 days ago
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Bio-Scripts
- # To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/Ubuntu system admins should run: sudo apt-get install...
2151 days ago
Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the leng...2924 days ago
- +58 more Bio-Scripts
Polls
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3204 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research interest...2369 days ago
Groups
Ruby is a dynamic, reflective, general-purpose object-oriented programming language that combines syntax inspired by Perl with Smalltalk-like features. It was also influe...3927 days ago
Tags
- SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to work for multiple samples. It can work for >= 2 samples, but we suggest that users should use >= 5 samples as in the work ...
Tags: SRBreak, Read-Depth, Split-Read, Framework, Breakpoints, Copy-Number, Variable, Regions
2189 days ago
Comments
Comment on "Install composer for ELGG"
php -r "copy('https://getcomposer.org/installer', 'composer-setup.php');" php -r "if (hash_file('sha384', 'composer-setup.php') === '906a84df04cea2aa72f40b5f787e49f22d4c...909 days ago
Comment on "Far Manager Commands and Links !"
You can also open an additional menu by holding down the button Shift, which is mainly intended for working with files and archives, namely: F1- add files to arch...947 days ago
- +2 more Comments
