Useful Bioinformatics Analysis Tools !
...A., GTShark: Genotype compression in large projects, Bioinformatics, 2019; 35(22):4791–4793, KMC Memory frugal k-mer counter. • Kokot, M....891 days ago
2059 days ago
Kmer: a suite of tools for DNA sequence analysis
...files. In addition to providing random access to the base level, it includes several analysis functions. Meryl: An out-of-core k-mer counter. The amount of sequence that...1019 days ago
Source Code and Pseudo Code !!
...ade is greater than or equal to 60 Print "passed" else Print "failed" endif 2. Set total to zero Set grade counter to one While grade counter is less than or equal to ten...2686 days ago
Genetic Algorithms demonstration with word DNA in Perl
...e minimum fitness for survival my $generation_count = 100000; # run for this many generations my $generation = 0; # generation counter my $pop_ref = [];...2399 days ago
Perl script for chi-squared test !
...dinucleotides, loop through sequence, take 2 bp and increment the hash counter foreach my $i (0..length($s...dinucleotides, loop through sequence, take 2 bp and increment the hash counter foreach my $i (0..length($s...438 days ago
Tags: DNA, Nucleotide, Counter, tools, scaf, chromatogram
2059 days ago