Results for "DB"
Bio-Scripts
Perl script to check modules installed !
..., 'Data::Dumper', 'File::Basename', 'Bio::SeqIO', 'FindBin', 'File::Remove',..., 'Statistics::R', 'Math::Round', 'File::Find', 'Bio::DB::Taxonomy', 'Pod::Usage'...1171 days ago
Install htop in elementary/Ubuntu OS !
...ssing triggers for bamfdaemon (0.5.3+18.04.20180207.2-0ubuntu1) ... Rebuilding /usr/share/applications/bamf-2.index... Processing triggers for man-db (2.8.3-2ubuntu0.1) ... Proce...1168 days ago
Python script to download covid genome !
...n seqs: if 'gene-region' in x and x['gene-region'] == "complete": nm = x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',id=nm, rettype =...1152 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1...1117 days ago
- ...ev build-essential bzip2-doc cdbs debhelper dh-autoreconf dh-s...ubuntu bionic/universe amd64 cdbs all 0.4.156ubuntu4 [45.4 kB]...reviously unselected package cdbs. Preparing to unpack .../04...138.18.04.1) ... Setting up cdbs (0.4.156ubuntu4) ... Settin...
1070 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1070 days ago
- ...for libc-bin (2.27-3ubuntu1.4) ... Processing triggers for doc-base (0.10.8) ... Processing 1 added doc-base file... Processing triggers for man-db (2.8.3-2ubuntu0.1) ......
997 days ago
Tadpole is 250x faster than SPADes assembler !
...ormult1 and deadzone. rollback=t Undo changes to reads that have lower coverage for any kmer after correction. markbadbases=0 (mbb) Any base ful...992 days ago
Command line to create blast uniref database !
...nzip -v uniref90.fasta.gz bin/pfilt uniref90.fasta > uniref90filt formatdb -t uniref90filt -i uniref90filt #When using NCBI BLAST+ the 'formatdb' command should be replaced b...966 days ago
Command line to download blast database / protein
...e all databases are available ftp://ftp.ncbi.nlm.nih.gov/blast/db/ https://ftp.ncbi.nlm.nih.gov/blast/db/ # Database detail / descr...st run this to download wget 'ftp://ftp.ncbi.nlm.nih.gov/blast/db/nr.*.tar.gz' #cat them int...959 days ago
