List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence...ces. 3D-footprint -- database of DNA-binding protein structures F...binding specificity information about DNA-protein complexes. 3D-fo...ntifier Identify protein family (and DNA) domai...1991 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two...nomeSize=2m \ -maxThreads=2 useGrid=false \ -pacbio-raw \ ~/pacbio/dna/sample...1942 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, d...tary alignment flag. Chimeric reads are indicative of structural variation in DNA-seq an...1834 days ago
10 NGS services companies around the globe !
...one of the leading players in DNA sequencing and array-based techno...Germany. The company provides DNA and RNA sequencing and bioservices solutions to...Inc. provides next generation sequencing services such as whole genome...Generation Sequencing, Sanger DNA sequencing, sequencing of bacteria a...1257 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for...me assemblies in conjunction with k-mer count information from raw, short-read sequencing data to genotype a wide spect...989 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...s of tiny parts and read on a sequencing computer in a genome sequencing experiment. Depending on the...plied topics, identifying the DNA sequence of an organism is useful. A...nce this is what the Illumina sequencing pipeline creates. This will h...1202 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brene...s/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplifying sequencing libraries. Quail, M. a et al....1045 days ago
Useful Bioinformatics Analysis Tools !
...space-saving solution for raw sequencing data, Bioinformatics,&nb...M Experimental compressor of sequencing reads. • Gra...lows robust robust mapping of DNA sequencing data, Bioinformatics...obust mapping of whole genome sequencing data, Poster at The Biol...861 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genom...y Genetics Analysis A biologist-centric software for evolutionary analysis of DNA and pr...675 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the litera...e variation 1. Begun D. J., Aquadro C. F., 1992 Levels of naturally occurring DNA polym...675 days ago