Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (u...n/main/qcluster.html Reads error correction Lighter Correction of sequencing errors in raw, whole genome sequencing reads (k-mer based) Software...2366 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been...biorxiv.org/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing analysis http://biorxiv.org/...2345 days ago
2345 days ago
List of visualization tools for genome alignments
.../resources/software/artemis/ DNannotator Annotation web...http://bioapp.psych.uic.edu/DNannotator.htm JVM Java Visual...quences derived from multiple sequencing technologies. Low- or high-de...quences in an entire Illumina sequencing run http://www.sourceforge.n...2278 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and ali...2268 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to ana...e Sciences, has over 11 years experience in molecular biology, next-generation sequencing based testing, clinical genom...2259 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material be...a eukaryotic species to gain a gene by HGT, foreign DNA must enter the host nucleus,...e donor and the host. Over the longer term, foreign DNA may be...845 days ago
Some useful Bioinformatics links
...sensitive mapping of nanopore sequencing reads with GraphMap |...d de novo using only nanopore sequencing data | Nature Methods https:...me-genome alignments https://dnanexus.github.io/dot/ Zoho Accounts h...utionarily conserved role for DNA inverted repeats in the genome | Nat...2236 days ago
2240 days ago
Tools to Predict the Impact of Missense Variants !
...al investigation is a key challenge in current sequencing studies for exploring...Evaluation of the diseaseācausing potential of DNA sequence alterations”...ould have occurred if the element were neutral DNA, but did not occur because the eleme...2198 days ago