Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...rtions.pl -- Installing: /home/urbe/anaconda3/envs/wgd/./post_processing/dupliStacks.pl -- Installing: /home/urbe/anaconda3/envs/wgd/./post_processing/dupliviz.pl -- Installing: /hom...1217 days ago
Steps to install Conda on Linux !
...er for Linux. ( https://docs.conda.io/en/latest/miniconda.html#linux-installers ) Anaconda installer for Linux. ( https://www.anaconda.com/products/individual ) $ chmod 777 Anaconda3-...1196 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...s://atom.io Usage: apm where is one of: ci, clean, config, dedupe, deinstall, delete, dev, de..., lns, login, ls, open, outdated, prune, publish, rebuild, rebuild-module-cache, remove, rm, search,...1190 days ago
Parse the NCBI taxonomy database with Perl !
...database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile', -directory=> "taxdump", -nodesfile=> "taxdump/nodes.dmp",...1186 days ago
Perl script to get all the descendent in a tree !
...database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile', -directory=> "taxdump", -nodesfile=> "taxdump/nodes.dmp",...1178 days ago
1177 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...# BEGIN { my @import_modules = ( 'Cwd', 'File...>new(); my (@installed_modules) = $inst->modules();...omics\n"; #Install NCBI taxdump my $url = 'ftp://ftp.ncbi....nload my $result = `mkdir taxdump; cd taxdump; wget ftp://ftp...1174 days ago
1172 days ago
Perl script to check modules installed !
...First, check if all the required modules have been installed in the...stem # BEGIN { my @import_modules = ( 'Cwd', 'File...ile', 'Try::Tiny', 'Data::Dumper', 'File::Basename',...alled->new(); my (@installed_modules) = $inst->modules();...1169 days ago
Python script to download covid genome !
...e = 'fasta', retmode= 'text').read().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/allseq.json", "w") as f: json.dump(allseq, f)1150 days ago