2129 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
We now need to install the poRe dependencies in R, which is very easy: R source("http://www.bioconductor.org/biocLite.R") biocLite("rhdf5") install.packages(c("shiny...2166 days ago
2167 days ago
Comment on "How to install Perl modules on Mac OS X in easy steps !!"
Our Perl script for drawing requires the GD module(2.41 or later version). Moreover, the GD module requires the following packages. The gd graphics library The PNG graphics libraryThe zlib compression library2181 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Install cpanm to make installing other modules easier (you'll thank us later). You need to type these commands into a Terminal emulator (Mac OS X, Win32, Linux) cpan App::cpanminus Now install any module you can find. cpanm Module::Name2210 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...al[M::main] ===> Step 4: graph cleaning <===[M::ma_sg_gen] read 129305 arcs[M::main] ===> Step 4.1: transitive reduction <===[M::asg_arc_del_trans] transitively reduced 83030 arcs[M::asg_arc_del_...2273 days ago
2279 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...amount, the read will be called unmapped. If 0, value will be dynamically determined. If < 0, no limit is set. [0] -q, --reg-reduce INT Attempt to heuristically reduce the number of regions if it...2284 days ago
Comment on "Perl and BioPerl Tutorials"
Learn Perl module basic http://mathforum.org/ken/perl_modules.html2301 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Informative bioinformatics bloggers Diving into Genetics and Genomics YOKOFAKUN Getting Genetics Done Gigabase or gigabyte Genome Spot CoreGenomics...2313 days ago