Results for "Data Mining"
Blogs
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapt...rimer sequence removal (iVar; amplicon data only) Duplicate read marking...ts and consensus; default for amplicon data || BCFTools, BEDTools; defaul...y Primer trimming (Cutadapt; amplicon data o...875 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &...ace-saving solution for raw sequencing data, Bioinformatics, 20...k-mer-based compression of sequencing data, Scientific Reports,&nbs...ki, L., Disk-based compression of data f...861 days ago
- Elgg is an open-source and highly customizable framework used for building an online s...ver, is written in PHP, and uses MySQL/MariaDB as a database backend, so you will need...systemctl restart apache2 Step 3 – Create a Databa...
709 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and...nimalQTLdb -- a livestock QTL database tool set for positional QTL information mining and beyond Search for publ...MBGD -- Microbial genome database for comparative analysis...hensive suite of programs and databases for comparative analysis o...675 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Fi...- node id in GenBank taxonomy database parent tax_id --...t node id in GenBank taxonomy database rank -- rank of t...this subtree has no sequence data yet comments -- free-...658 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This...alse 3. Common-sense approaches to sharing tabular data alongside publication ht...ce/article/pii/S2666389921002300 4. A Reproducible Data A...539 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential s...r that is appropriate for your type of data and research question. I...indexing tools. Prepare the read data: The reads should be in a for...ypically involves specifying the input data,...421 days ago
Calculate the significance of the difference between two trends
To calculate the significance of the difference between two trends, you can use a s...ile H1 might be that there is a significant difference. Collect data on the two trends. Make sure that the data i...416 days ago
Free Books on Machine Learning and Artificial Intelligent !
An Introduction to Statistical LearningThis book provides a broad and l...o wishes to use contemporary tools for data analysis. https://hastie.su....mains/ISLR2/ISLRv2_website.pdf Python Data Science HandbookYou’ll...eaning, manipulating, and transforming data &...414 days ago
