Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-...age libgetopt-argvfile-perl. (Reading database ... 193749 files and dire...esign, analysis, and interpretation of data for studies in public health...ting structural variants in sequencing data u...1517 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$...EMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS IN...tml5lib-1.0.1-py37_0 ... installing: importlib_metadata-0...1517 days ago
1448 days ago
1408 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified ARCHIVE/ 02/01/2020, 05:30:00 ASN_B...:00 737 B 09/06/2011, 05:30:00 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/g...1408 days ago
1221 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Total..._201904_UPDATE/opts.k2d minikraken2_v2_8GB_201904_UPDATE/database100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/databa...1220 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::S...em and download the mandatory database # BEGIN { my @impo...ile', 'Try::Tiny', 'Data::Dumper', 'File::Basenam...nt "\nDownloading third party database for Alienomics\n"; #In....arb-silva.de/fileadmin/silva_databa...1166 days ago
1164 days ago
Perl script to check modules installed !
#use strict; use warnings; use ExtUtils::Installed; # # First, check if all the required modules have been i...ir', 'File::Copy', 'POSIX', 'Tie::File', 'Try::Tiny', 'Data::...1162 days ago