1435 days ago
Download minikraken database !
...raken2_v2_8GB_201904_UPDATE/taxo.k2d minikraken2_v2_8GB_201904_UPDATE/opts.k2d minikraken2_v2_8GB_201904_UPDATE/database100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database150mers.kmer_distrib minikrak...1207 days ago
Install htop in elementary/Ubuntu OS !
.../ubuntu bionic/main amd64 htop amd64 2.1.0-3 [80.0 kB] Fetched 80.0 kB in 0s (239 kB/s) Selecting previously unselected package htop. (Reading database ... 176684 files and director...1145 days ago
Parse the NCBI taxonomy database with Perl !
use Bio::DB::Taxonomy; use warnings; my $sps="human"; # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile',...1165 days ago
Perl script to get all the descendent in a tree !
use warnings; use Bio::DB::Taxonomy; #Rotifera 10190 # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile',...1157 days ago
Conda command to install checkV
...ction: done Executing transaction: \ CheckV v1.0.1 an external database which needs to be downloaded and unarchived. The link for the database can be found in CheckV's...628 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...lled in the system and download the mandatory database # BEGIN { my @import_m...else here print "\nDownloading third party database for Alienomics\n"; #Instal...U = 'https://www.arb-silva.de/fileadmin/silva_databases/release_138_1/Exports/SILVA_...1153 days ago
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