Results for "Database Development"
Bio-Scripts
Commands to install Statistics::R module in Ubuntu !
$ sudo apt-get install libstatistics-r-perl Reading package lists... Done Building dependency tree Readin...(84.0 kB/s) Selecting previously unselected package r-base. (Reading database .....1520 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --->...
1451 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_20190..._8GB_201904_UPDATE/opts.k2d minikraken2_v2_8GB_201904_UPDATE/database100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database150...1223 days ago
Install htop in elementary/Ubuntu OS !
neelam@neelam-Lenovo-ideapad-320-15ISK:~$ sudo apt-get install htop Reading package lists... Done Building depend...kB in 0s (239 kB/s) Selecting previously unselected package htop. (Reading database .....1161 days ago
Parse the NCBI taxonomy database with Perl !
use Bio::DB::Taxonomy; use warnings; my $sps="human"; # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile', -directo...1181 days ago
Perl script to get all the descendent in a tree !
use warnings; use Bio::DB::Taxonomy; #Rotifera 10190 # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile', -directo...1173 days ago
Conda command to install checkV
(mENV) [jnarayan@hn1 Monkey_Pox]$ conda install -c conda-forge -c bioconda checkv Colle...g transaction: \ CheckV v1.0.1 an external database which needs to be downloaded and unarchived. The link for the database ca...644 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; us...e system and download the mandatory database # BEGIN { my @import_m...print "\nDownloading third party database for Alienomics\n"; #Instal...://www.arb-silva.de/fileadmin/silva_databases/r...1169 days ago
- #use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Ex...nstalled in the system and download the mandatory database # BEGIN { my @import_m...ipt else here print "\nDownloading third party database fo...
1167 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ sudo apt install r-base-core [sudo] password for vik:...s from packages: 100% Selecting previously unselected package m4. (Reading database .....
1063 days ago
