Results for "Deletion"
Blogs
Computer simulation of genetic mechanism !!
...Pedigree Structures http://bioinformatics.org/simped/ Simprot A program to simulate protein evolution by substitution, insertion and deletion http://www.uhnresearch.ca/lab...2977 days ago
Structural variation: the hidden genomic treasure
...s. Structural variants (SVs) such as deletions, insertions, duplications, i...and unbalanced ones such as duplications and deletions (copy number variations or C...variations (Large insertions, translocation, deletion, inversions....) Tools...2705 days ago
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Bookmarks
- ...ator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and si...
2876 days ago
- ...ints. The Syntax (shown above the table) gives a detailed description of the variant and its location (e.g. chr11:g.36585230_76606619del, a deletion of roughly 40Mb on chrom...
2775 days ago
- +7 more Bookmarks
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...for Pedigree Structures http://www.hgsc.bcm.tmc.edu/content/simpedSimprot A program to simulate protein evolution by substitution, insertion and deletion http://www.uhnresearch.ca/lab...3740 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...) in less than 15 minutes; can annotate SNPs, MNPs, and insertions and deletions; Provides assessment of impa...ription: Combined Annotation Dependent Depletion; tool for scoring SNV deletions/insertions; “integrate...2911 days ago
- +3 more Top-level pages
News
- ...has released an algorithm, called Scalpel, for finding insertions and deletions in next generation sequencin...to the reference genome cannot obscure the presence of an insertion or deletion. Scalpel's innovation is to r...
3549 days ago
- ...re diseases focuses mostly on sequencing of fewer genes, followed by a deletion/duplica-tion analysis by mult...encing) can allow us to detect all types of mutations, including large deletions/duplications, thus allowing...
2242 days ago
Video
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...nd accurately computationally identify variants. More recently, the analytic approaches have been extended to systematically identify insertion/deletion variation, translocations, an...3873 days ago
Tags
- The laboratory is focused on the discovery and analysis of structural variation (SVs) from genomic sequence data. As part of the 1000 Genomes Project and other endeavors, we have helped produce initial fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (o...
Tags: Bioinformatics, Gene, Epigenomics, Structure Variation, Deletion, Breakpoint, Chromosome
2995 days ago
Comments
- ...including Illumina, PacBio, and Oxford Nanopore. It can also simulate different types of sequencing errors, such as substitution, insertion, and deletion errors. dwgsim: dwgsim i...
418 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...h penalty for SW-alignment. [3] -O --open-pen [INT(,INT,INT,INT)] Gap open penalty for SW-alignment(end2end-global: insertion, deletion, one-end-extend: insertion, deletion). [5(,5,5,5)] -E --ext-pen [I...2125 days ago
