Installing Bandage on Ubunty !
...ster) ✗ git clone https://github.com/rrwick/Bandage.gitCloning into 'Bandage'...remote: Counting objects: 7813, done.remote: Total 7813 (delta 0), reused 0 (delta 0), pack-reused 7813Receiving...2199 days ago
Install ImageMagick from Unix Source
...oning into 'ImageMagick'...remote: Counting objects: 124593, done.remote: Compressing objects: 100% (77/77), done.remote: Total 124593 (delta 94), reused 94 (delta 64), pack-reused 124452Receiv...2155 days ago
2644 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization...hysical architecture of genomes. Delta takes Hi-C or ChIA-PET c...nsus 3D structure of the genome. Deltafeatures a highly interactive...puts. https://github.com/zhangzhwlab/delta2337 days ago
Quick next generation sequencing (NGS) terms definition
...from a normal distribution. Therefore, in the absence of structural variants, mapping locations of the paired ends span within an interval [δmin,δmax]. Most (>90%) of paire...2532 days ago
My commonly used commands in Bioinformatics
...n -t 24 long_reads.fastq.gz - assembly.fasta racon_assembly.fasta nucmer -p nucmer assembly.fasta racon_assembly.fasta show-snps -C -T -r nucmer.delta This reports Racon's chang...2120 days ago
The Cat: evolution, domestication and Genome 10k
...g heretofore unrecognized species of Orangutans, African forest elephants, and Bornean clouded leopards. He is credited with the discovery of CCR5 delta 32, the first of 20 human AID...3838 days ago
2161 days ago
Installing Porechop on Ubuntu !
...git clone https://github.com/rrwick/Porechop.git Cloning into 'Porechop'... remote: Counting objects: 1579, done. remote: Total 1579 (delta 0), reused 0 (delta 0), pack-reused 1579 Receivi...2115 days ago
Comment on "SPAdes hybrid genome assembly"
...=nucleotide&id=NC_000913.3&rettype=fasta&retmode=txt" > NC_000913.3.fa nucmer NC_000913.3.fa single_contig.fa mummerplot -png out.delta display out.png &2184 days ago