Results for "Delta"
Blogs
Installing Bandage on Ubunty !
...ster) ✗ git clone https://github.com/rrwick/Bandage.gitCloning into 'Bandage'...remote: Counting objects: 7813, done.remote: Total 7813 (delta 0), reused 0 (delta 0), pack-reused 7813Receiving...2183 days ago
Install ImageMagick from Unix Source
...oning into 'ImageMagick'...remote: Counting objects: 124593, done.remote: Compressing objects: 100% (77/77), done.remote: Total 124593 (delta 94), reused 94 (delta 64), pack-reused 124452Receiv...2139 days ago
Bookmarks
- ...eudomolecule taking overlaping contigs and gaps in to account. MUMmer's alignment generating programs, Nucmer and Promer are used followed by the 'delta-filter' utility function. Use...
2628 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization...hysical architecture of genomes. Delta takes Hi-C or ChIA-PET c...nsus 3D structure of the genome. Deltafeatures a highly interactive...puts. https://github.com/zhangzhwlab/delta2322 days ago
- +4 more Bookmarks
Top-level pages
Quick next generation sequencing (NGS) terms definition
...from a normal distribution. Therefore, in the absence of structural variants, mapping locations of the paired ends span within an interval [δmin,δmax]. Most (>90%) of paire...2516 days ago
My commonly used commands in Bioinformatics
...n -t 24 long_reads.fastq.gz - assembly.fasta racon_assembly.fasta nucmer -p nucmer assembly.fasta racon_assembly.fasta show-snps -C -T -r nucmer.delta This reports Racon's chang...2104 days ago
Video
The Cat: evolution, domestication and Genome 10k
...g heretofore unrecognized species of Orangutans, African forest elephants, and Bornean clouded leopards. He is credited with the discovery of CCR5 delta 32, the first of 20 human AID...3822 days ago
Bio-Scripts
- ...loning into 'bloomfilter'... remote: Counting objects: 867, done. remote: Compressing objects: 100% (11/11), done. remote: Total 867 (delta 7), reused 12 (delta 4), pack-reused 852 Receivin...
2145 days ago
Installing Porechop on Ubuntu !
...git clone https://github.com/rrwick/Porechop.git Cloning into 'Porechop'... remote: Counting objects: 1579, done. remote: Total 1579 (delta 0), reused 0 (delta 0), pack-reused 1579 Receivi...2100 days ago
- +6 more Bio-Scripts
Tags
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facilitate visually annotating and exploring the 3D physical architecture of genomes. Delta takes Hi-C or ChIA-PET contact matrix as input and predicts the topologically associating domains and chromatin loops in the ge...Tags: Delta, Web-based, 3D, genome, visualization, analysis, platform
2322 days ago
- Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip the delta file to speed up upload (usually 2-4X f...
Tags: assemblytics, delta, analyze, alignment, assembly, reference, genome, visualization
2146 days ago
Comments
Comment on "SPAdes hybrid genome assembly"
...=nucleotide&id=NC_000913.3&rettype=fasta&retmode=txt" > NC_000913.3.fa nucmer NC_000913.3.fa single_contig.fa mummerplot -png out.delta display out.png &2168 days ago
