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Results for "Deployment Tool"

Bio-Scripts

• • Jit@jit.aber

  

  Fastq-dump for SRA download

  ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ....rror --legacy-report use legacy style 'Written spots' for tool ./fastq-dump : 2.9.1 ( 2....

  2127 days ago

• • Jit@jit.aber

  

  Installing Porechop on Ubuntu !

  ➜ Tools git:(master) ✗ git clone https://github.com/rrwick...869/869), done. Checking connectivity... done. ➜ Tools git:(master) ✗ cd Porechop...IN_SPLIT_READ_SIZE] [-h] [--version] Porechop: a tool for finding adapters in Oxfor...

  2107 days ago

• • Jit@jit.aber

  

  Downloading GATK !

  jitendra@jitendra-UNLOCK-INSTALL[SNP] wg...[] Usage template for all tools (uses --spark-runner LOCAL when used with a Spark tool) gatk AnyTool toolArgs...(BETA Tool) (Internal) Collects read met...(BETA Tool) Generate recalibration table...

  2076 days ago

• • Neelam Jha@neelam

  

  Script to Plot the Coverage

  #!/bin/bash Plot the coverage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_M...

  2005 days ago

• • Jit@jit.aber

  

  Pack a perl program with their dependencies on Ubuntu !

  #Follow steps to create your own executable ./web jit@jit-H...bookmarks Neelam Jha@neelam GSP4PDB: a web tool to visualize, search and expl...ernsBy Neelam Jha yesterday GSP4PDBwebtoolvisualizesearchexploreprotein-...

  1512 days ago

• • Surabhi Chaudhary@surabhi

  

  Extract the sequence by IDs !

  #This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biological dat...

  1403 days ago