Results for "Dev"
Bio-Scripts
(base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 -...1455 days ago
- ...dev libglib2.0-dev libglib2.0-dev-bin libgraphite2-dev libharfb...pdates/main amd64 libstdc++-7-dev amd64 7.5.0-3ubuntu1~18.04 [1...ntu bionic/main amd64 libblas-dev amd64 3.7.1-4ubuntu1 [143 kB]...aring to unpack .../007-libc6-dev_2.27-3ubuntu1.4_amd64.deb ......
1067 days ago
Bash script to check installed bioinformatics program !
...Tools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name dpkg -s $name &> /dev/null if [ $? -ne 0 ]...1059 days ago
Get the Linux system information !
...if [[ $(id -u) -eq 0 ]]; then result=$(du -sh /home/* 2> /dev/null) display_result...Utilization (All Users)" else result=$(du -sh $HOME 2> /dev/null) display_result...961 days ago
- ...ssianlength=t \ minlength=1000 midlength=20000 maxlength=100000 \ out=/dev/null # make 60x hapl...in=illumina1.fastq.gz in2=illumina2.fastq.gz out=illumina.int.fastq 2>/dev/null # use KmerGenie...
941 days ago
Bash script to simulate a genome !
...ssianlength=t \ minlength=1000 midlength=20000 maxlength=100000 \ out=/dev/null # make 60x hapl...in=illumina1.fastq.gz in2=illumina2.fastq.gz out=illumina.int.fastq 2>/dev/null # use KmerGenie...930 days ago
- #!/bin/bash #Counting k-mers for different k echo "k,unique,distinct,total" for k in {1..15}; do kat hist -o phiX_$k.hist -m $k phiX.fasta >/dev/null 2>&1 egrep -v '^#' phiX_$k.hist|awk '{if ($1==1) u=$2; d+=$2; t+=$2*$1;}\ END{print "'$k',"u","d","t}' done
807 days ago
- #!/usr/bin/env Rscript library(RCircos) # usage: Rscript make_circos.r # parse args args = commandArgs(trailingOnly=TRUE) sv.file
312 days ago
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