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How to install Perl modules manually, using CPAN command, and other quick ways
...ings.# cpanSorry, we have to rerun the configuration dialog for CPAN.pm dueto some missing parameters...CPAN build and cache directory? [/root/.cpan]Download target directory? [/root/.cpan/sources]Directo...3965 days ago
- ...ith the software that Apple installs by default, Fink creates its own directory tree at /sw where it installs...the GD module, then it will open a shell and drop you into the build directory. Apply below patch to the Mak...
3955 days ago
How to Prepare your Bioinformatics CV ?
...consultant concerned may be vital. Alternatively, it is worth while doing your homework by looking up your prospective consultant in the medical directory. This may occasionally prompt...3388 days ago
Installing Perl environment on Linux
By using plenv, you can easily install and switch among different version of Perl. This will be installed under your home directory in~/.plenv. Install latest Perl (with supporti...2336 days ago
BBTools for bioinformatician !
...lso, like "in=read#.fq", and it will get expanded into 1 and 2. Added feature: One can specify a directory for the "ref=" argument. If anything in the list is a directory, it will use all fasta files...2285 days ago
Basic command-line to run BLAST
...th the same name as the database plus new extensions (.pin, .psq, etc). To make blast work, these files, called index files, must be in the same directory as the fasta file. blastp [...2259 days ago
Installing Bandage on Ubunty !
...https://github.com/rrwick/Bandage.git Open a terminal in the Bandage directory. Set the environment variabl...rogram into /usr/local/bin: sudo make install. The Bandage build directory can then be deleted. ➜ Too...2204 days ago
Install ImageMagick from Unix Source
...FFIsBigEndian... yeschecking for TIFFReadEXIFDirectory... yeschecking for TIFFSetErr...ing for gxps... gxpschecking for Apple fonts directory... not found!checking for Dej...c '/usr/local/lib/pkgconfig'make[2]: Leaving directory '/home/jitendra/Downloads/Ima...2161 days ago
- ...all in src make[2]: Entering directory '/home/urbe/Tools/trinityrnas...ounter.o make[3]: Entering directory '/home/urbe/Tools/trinityrnas...aryK_temp.a make[1]: Leaving directory '/home/urbe/Tools/trinityrnas...default( your current working directory: "/home/urbe/Tools/trinityrna...
2148 days ago
CANU genome assembly parameters !
...-pacbio-raw \ ~/pacbio/dna/sample_reads.fastq.gz There is a brilliant section in documentation about parameter tweaking. The output directory contains will contain many fi...1960 days ago
