Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly s...DNA sequences an important part of analysis pipelines. Here we use Taxobl...sequences. This or similar types of analysis, in combination with manual c...ic data to public repositories. Our analysis pipeline is open-source and f...2369 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinI...2369 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possibi...well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists. "T...2365 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory an...mbly & comparative genomics, variant identification & analysis, gene expression & regulation, personal genome analysis, and cancer genomics. The gra...2363 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2363 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifical...ccurate alignment tool, ACANA is particularly useful in comparative sequence analysis for identifying conserved fun...2356 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing...and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive vis...2354 days ago
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NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific feature...Sim is read characterization, which provides a comprehensive alignment-based analysis and generates a set of read p...2344 days ago