3939 days ago
3934 days ago
Bioinformatics and Sequencing Courses and Workshops
...ope, Cold Spring Harbour USA, Wellcome Trust UK and NOVA Europe also organise bioinformatics and sequencing courses annually: http://www.embl.de/training/events/index.php?...3899 days ago
Commercial and public next-gen-seq (NGS) software
...contigs and snps. Align/Assemble to a reference BFAST - Blat-...ce/Unix. MAQ - Mapping and Assembly with Qualities (renamed from....php/BFAST De novo Align/Assemble ABySS - Assembly By Short Se...ome (without any ab initio assembly of the reads), and all the p...3511 days ago
Software packages for next gen sequence analysis
..." into mini-contigs before assembly. Includes SNP detection, CHi...C Slater and Ewan Birney from EMBL. C for POSIX. * GenomeMapper...Italy. Win/Linux. * RMAP - Assembles 20 - 64 bp Illumina reads t...Mimicking Intelligent Read Assembly) is able to perform true hyb...3235 days ago
Comprehensive list of visualization tools for biological pathways
...exts http://gepat.sourceforge.net/ iPath Web-based tool for the visualization, analysis and customization of pathway maps http://pathways.embl.de/ Kegg-Based Viewer ...2279 days ago
Tools for Searching Repeats And Palindromic Sequences
...ces at Vital-IT For more sophisticated repeat finding you will want to look at tools using Repbase for example: CENSOR CENSOR@GIRI CENSOR@EMBL-EBI RepeatMasker MUMmer...2203 days ago
List of visualization tools for network biology
...NOW hosts http://snow.bioinfo.cipf.es STITCH Resource to explore known and predicted interactions of chemicals and proteins http://stitch.embl.de/ STRING Protein interact...2280 days ago
Steps to find all the repeats in the genome !
...named "genome.fasta". ./RepeatMasker -pa <number_of_processors> -nolow -norna -no_is -div <divergence_value> -lib RepeatMaskerLib.embl -gff -xsmall -small -poly -sp...240 days ago