wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named...tools for modeling and visualization, rendering these analyses accessible to genomics researchers in a convenient m...1392 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
PyParanoid is a pipeline for rapid identification of homolog...et of genomes - a central task of any comparative genomics analysis. The "gold standard"...deluge of sequencing data means that comparative genomics analyses could be performed o...1371 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt...1362 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimpl...y, population and evolutionary biologists working in the field of comparative genomics.1280 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fun...n the analysis and interpretation of experimental genomics data. It will be structured a...d analysis strategies that underlie computational genomics research. The primary go...1239 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas ...1239 days ago
1225 days ago
gggenomes: A grammar of graphics for comparative genomics
gggenomes is a versatile graphics package for comparative genomics. It extends the popular R visualization packageggplot2 by adding dedicated plot functions for genes, syntenic regions, etc. and verbs to manipulate the plot to, for example, quickly zoom in into gene neighborhoods.1199 days ago
979 days ago
880 days ago