A Brief Bioinformatics Tutorial
...o blast it against the database of your choice to find homologues, how to perform a multiple alignment of the homologues you've selected and how to edit this alignment. The Structur...3650 days ago
3350 days ago
Standardized velvet assembly report
...alignments against a reference genome). If using BLAT, add faToTwoBit,gfClient,gfServer to your PATH. If using BLAST, add blastall and formatdb. Edit permute.sh to your liking, pa...2717 days ago
2706 days ago
RGFA: powerful and convenient handling of assembly graphs
...sed GFA specification in Ruby. It allows the user to conveniently parse, edit and write GFA files. Complex...g of linear paths can be performed. A typical application of RGFA is the editing of a graph, to finish the...1580 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...r algorithm is based on two novel ideas: using a classical shortest path algorithm to find a sequence of overlapping short reads that minimizes the edit score to a long read and exte...2098 days ago
STELLAR: fast and exact local alignments
STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X at http://www.seqan.de/projects/stellar.2088 days ago
1954 days ago
Apollo: a sequence annotation editor
...evaluating the data supporting each annotation. Apollo was developed to meet this need, enabling curators to inspect genome annotations closely and edit them1726 days ago
1562 days ago