List of motif discovery tools !
In genetics, a sequence motif is a nucleo...nces. 3D-footprint -- database of DNA-binding protein structures F...binding specificity information about DNA-protein complexes. 3D-fo...entifier Identify protein family (and DNA) domains, patterns, motifs, p...1990 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take abo...enomeSize=2m \ -maxThreads=2 useGrid=false \ -pacbio-raw \ ~/pacbio/dna/sample_reads.fastq.gz There...1941 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that ma...ntary alignment flag. Chimeric reads are indicative of structural variation in DNA-seq and it may indicate the p...1833 days ago
10 NGS services companies around the globe !
The global NGS services market is...Inc. is one of the leading players in DNA sequencing and array-based te...nstance, Germany. The company provides DNA and RNA sequencing and bioser...of Next Generation Sequencing, Sanger DNA sequencing, sequencing of bac...1256 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...of taking a large number of short DNA sequences and placing them bac...riginal chromosomes from which the DNA originated relates to genome...in applied topics, identifying the DNA sequence of an organism is us...=Main_Page Genome visualisers and editors:Artemis - http://www.sang...1201 days ago
Levenshtein and Damerau-Levenshtein distance !
Levenshtein Distance Also known as Edit Distance, it is the number of transformations (deletions, insertions, or subst...uo;o” to “c”, which will give us a Levenshtein Distance of 2.Edi...947 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing...p;Deorowicz, S., Grabowski, Sz., Compression of DNA sequences in FASTQ format,&nb...hisper: read sorting allows robust robust mapping of DNA sequencing data, Bioinfo...860 days ago
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List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Prot...ry Genetics Analysis A biologist-centric software for evolutionary analysis of DNA and protein sequences. M...674 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...uadro C. F., 1992 Levels of naturally occurring DNA polymorphism correlate with r...x traits 1. Galton F., 1877 Typical laws of heredity. Nature 15: 492-495- 512-51...Ridley. Evolution (Univ. of Oxford Press, 2nd edition, 2004))...673 days ago