Results for "Elements (TEs)"
Top-level pages
"Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, sta...shing biological laws solely from data analysis by induction (e.g. A.J. Lotka, Eleme...3948 days ago
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page provide links of some the goo...ner.lamf.uwindsor.ca http://www.chem.vt.edu Periodic table of the elements Interactive periodic table of the eleme...3131 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings T..., find the nearest gene, exon, miRNA or custom features such as most conserved eleme...3626 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helic...s by aligning shotgun reads to the finished genome sequence. Highly repetitive eleme...3520 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Hel...s by aligning shotgun reads to the finished genome sequence. Highly repetitive eleme...3244 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small...sed for studying noncoding variants; integrates comprehensive set of noncoding eleme...2910 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome. The mapping occ...Flag: a single integer value (e.g. 16), which encodes multiple elements of meta-data regarding a read and its alignment. Eleme...
2870 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality...ng a Reference Sequence The abundance of repeat elements in genomes can impede the ass...e element assembler. It assembles the transposable eleme...2687 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed...direct and inverted repeats, insertion sequences, transposons and other mobile eleme...2333 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n...rl -le 'print "a"x50' # Create a repeated list of elementsperl -le '@list = (1,2)x20; pr...ngth "one-liners are great"' # Find the number of eleme...2303 days ago
