2049 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
...nbsp;de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds th...2027 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
...enomes. MITOS is a pipeline designed to compute a consistent de novo annotation of the mitogenomic sequences. The software allows for a systematic error screening, the standardisatio...2020 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user t...1988 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a correction policy for erroneous long reads, based on optimal combinations of decision...1953 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo assemblies using...tml nxrepair aligned_matepairs.bam assemblyfasta.fasta error_locations.csv new_fasta.fasta...1930 days ago
wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
...nbsp;de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds th...1919 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
...er, it does not include a polishing step, so its assemblies have a high error rate – they are essenti...on is a great polishing tool that can be used to clean up assembly errors. It's also very fast and wel...1618 days ago
RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
...fies exact kmer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base....1586 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...tly less computing resources and storages. After assembly, the per-base error rate is about 97-98%, to furt...can be used to correct TGS long reads with approximately 15% sequencing errors, and NextGraph can be used t...1585 days ago