Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
...with Intel Compiler only Cycles enumeration (aka Bubbles) as part of de novo de bruijn graphs assembly using colours can be unpractical for large error prone genomes which makes the...1561 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...in bloom filter) ; 1-start from count kmers showed up in bloom filter; 2-start from dumping kmer counts into a jf_dump file; 3-start from error correction.1553 days ago
Musket - a multistage k-mer spectrum based corrector
...sket is a well-established leading next-generation sequencing read error correction algorithm targetti...veal that Musket is consistently one of the top performing substitution-error-based correctors.1553 days ago
QuorUM: An Error Corrector for Illumina Reads
We produce trimmed and error-corrected reads that result in assemblies with longer contigs and fewer errors. We compared QuorUM against several published error correctors and found that it...1553 days ago
Tadpole: an assembler, error-corrector, and read-extender
...sed assembler, with additional capabilities of error-correcting and extending read...does not currently do scaffolding. To error-correct reads:tadpole.sh in=r...s.fq out=extended.fq mode=extend el=50 er=50To error-correct and extend at the sam...1553 days ago
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flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
...ot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of consensus and error-prone sequences, FlexiDot har...1474 days ago
JumboDB: tool for de Bruijn graph construction
jumboDB tool for fast de Bruijn graph construction from long sequences (reads or genomes) with very low error rate. JumboDB is not a genome assembler by itself but rather a subroutin...994 days ago
Fix rewritable error of ELGG !
The mod_rewrite module uses a rule-based rewriting engine, based on a PCRE regular-expression parser, to rewrite requested URLs on the fly. By default, ...904 days ago