Comment on "A quick guide to Phred scaling"
.... It is used to quantify the probability of an error in each base call in a sequen...to a 10-fold decrease in the probability of an error. For example, a Phred score o...he Phred score, and p is the probability of an error in the base call. Qualit...426 days ago
426 days ago
Comment on "Short-read assembly using Spades !"
...or or a genome browser. SPAdes also provides several options for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction. The SPAdes manual...432 days ago
Comment on "Sibelia: A comparative genomics tool"
...-s loose Helicobacter_pylori.fasta Important note -- "Sibelia" requires some free space on HDD to run. If you experience any problems and see error messages that mention tempora...1296 days ago
2110 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...lty for end-clipping. [5] Read options: -e --err-rate [FLOAT] Maximum error rate of read. [0.04] -d --dif...ratio between read and reference. [0.04] -x --mis-rate [FLOAT] Maximum error rate of mismatch within reads...2134 days ago
2148 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap.... Works only for anchored modes. [false] --max-error FLT If an alignment has error....0, this filter is disabled. [1.0] --max-indel-error FLT If an alignment has indel...2303 days ago
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