Results for "Estimator"
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kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. I...2181 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...een two (or three) sequence files or hashes. sect: SEquence Coverage estimator Tool. Estimates the coverage...ge along with GC% for each sequence in the assembly.SEquence Coverage estimator Tool. filter: Filtering tool...1995 days ago
Indexcov: fast coverage quality control for whole-genome sequencing
indexcov, an efficient estimator of whole-genome sequencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomalies, recognize...2089 days ago
ALE: Assembly Likelihood Estimator
Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly. Depending on your genome size you may want to convert the .wig files to the BigWig format.437 days ago
