Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of the hexaploi...plotypes to improve the accuracy of variant calling results and to infer the evoluti...2169 days ago
Circlator: automated circularization of genome assemblies using long sequencing reads
A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Ci...using long sequencing reads", Hunt et al, Genome Biology 2015 Dec 29;16(1):294. doi: 1...2186 days ago
CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, zoomable maps of circular genomes....mples of the various output types, see the CGView gallery. http://wishart.biology.ualberta.ca/cgview/gallery.ht...2150 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and c...sification using targeted short read sequencing.” Source Code for Biology and Medicine, 11, 13. do...2100 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://mulan.dco...nd finished-quality sequences to identify functional elements conserved over evoluti...2085 days ago
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Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev... The Biotite package bundles popular tasks in computational biology into an unifying framework, w...1970 days ago
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EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequenc...from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract)...1952 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interac...Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed]&nbs...1936 days ago