2481 days ago
Bandage: interactive visualization of de novo genome assemblies
...es are freely available at https://github.com/rrwick/Bandage. Bandage is implemented in C++ and supported on Linux, OS X and Windows. A full feature list and screenshots are avai...2342 days ago
2338 days ago
AliTV—interactive visualization of whole genome comparisons
...n of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotations and phylo- geneti...2306 days ago
Alfred: BAM Statistics and Feature Counting
The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfre...2293 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...ms, including genome alignment result and orthologs clusters, are also supported to be further analyzed or visualized in PGAP-X. The workflow and feature snapshot in PGAP-X were shown...2292 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
...terpretable description of all loops, stems, and pseudoknots, along with the positions, sequence, and flanking base pairs of each such structural feature. The bpRNA code is written i...2173 days ago
CGView - Circular Genome Viewer
...ipelines, as a means of generating visual output suitable for the web. Feature information and rendering opt...er, allowing rapid genome browsing, and facilitating data sharing. The feature labels in maps can be hyperli...2144 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...based approaches or other Protein-based approaches (for instance, PEP_scaffolder ) for scaffolding genome sequences. The most important feature of this method is to improve...2066 days ago
Qualimap2: Evaluating next generation sequencing alignment data
...raphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. Supported types...2062 days ago