2173 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...on) in the form of heat colors which can be highly advantageous in the scientific interpretations and research work. The package provide multiple features like visualizing multiple set...1862 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate al...2186 days ago
WhatsHap: fast and accurate read-based phasing
...ing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads. Features Very accurate results...2181 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
..., embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, smooth scrolling and...2149 days ago
Genome U-Plot: a whole genome visualization
...researchers to generate novel insights and hypotheses by visualizing SVs such as deletions, amplifications, and chromoanagenesis events. The main features of the Genome U-Plot are its...2134 days ago
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both st...2095 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
...les upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch to train the Gibbs free-energy changes on a variety of features at different levels of sequen...2076 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are: Import of mapped data...2075 days ago
2031 days ago