Results for "File"
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Awesome perl frameworks, libraries and software - PART 1
...urity kbh3rd/shptosvg - Shapefile to SVG renderer in Perl famz...- Perl module to create Excel XLSX files. plainblack/webgui - A....7 briandfoy/Learning-Perl-Sample-Files - Extra files for use w...proc - get %INC and dump into file formalin14/Transformer ...2502 days ago
- ...rking on your homework. Excel File Quite frequently, the sample...sheet="Sheet1") Minitab File If the data file is in ...nbsp;read from .mtp file SPSS File For the...sp;help(read.table) CSV File The sample data can also be...
2502 days ago
- ...rectory to store all the resulting files (required) --sc...ersion Input data: --12 <filename> file with interl...2,..,9) --pe<#>-2 <filename> file with revers...2,..,9) --hqmp<#>-s <filename> file with unpair...
2364 days ago
Converting BLAST output into CSV
...We’ll discuss ‘git’ more later; for now, just think of it as a way to get ahold of a particular set of files. In this case, we’ve placed the files in /root/ngs-scripts/, and y...2350 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...ce, or splitting the reads into multiple output files, one per reference. BBSplit...rding which sequences came from which reference file. BBSplit is a tool that bins...eads)In this case, "int=t" means that the input file is paired and interleaved. Fo...2327 days ago
- ...ely print the desired lines from a file, so if you print the first an...t. sed -n '1~4s/^@/>/p;2~4p' INFILE.fastq > OUTFILE.fasta U.../>/'g | tr -s "/t" "/n" > OUTFILE.fasta EMBOSS:seqret Stand...ss output with GZIP. [-i INFILE] = FASTA/Q input file. defau...
2318 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BE...ex/' # Number all lines in a file using a custom format (emulat...ut (GMT, localtime)tail -f logfile | perl -ne 'print scalar gmti...-z/N-ZA-Mn-za-m/' # ROT 13 a fileperl -lpe 'y/A-Za-z/N-ZA-Mn-za...2315 days ago
- ...llow the following commands :- Code: $ samtools view -b -S file.sam > file.bam Then you will need to...sort file.bam file-sorted followed by Code: $ samtools index file-sorted.bam in order to get...
2304 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...t directory, including hidden files ls -F — list all...— make directory dir rm file — remove file rm -...mdash; output the contents of file as it grows, starting with th...- good for scripts chmod 644 file — you can read and...2293 days ago
Awk for Bioinformatician and computational biologist
...ctions} /pattern2/ {Actions}' file The working of Awk is as f...wk prints every line from the file. $ awk '{print;}' data/test....{ Actions before reading the file}{Actions for everyline in the...load the contents of another file in addition to the one you ar...2292 days ago
