Results for "Filter"
Blogs
...testing mode. Strand NGS includes workflows with quality assessment and filter sections that do not require...s in Strand NGS allow users to execute sequence analysis with stringent filtering to eliminate false positiv...2801 days ago
BBTools for bioinformatician !
...stands for "quality count histogram". Filter SAM/BAM file by read length....sam out=y.sam minlength=50 maxlength=200 Filter SAM/BAM file to detect/filter...-----------------------------------------------Filterbyname.shBy default, "filterby...2268 days ago
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Bookmarks
YASS :: genomic similarity search tool
...T]) using different scoring schemes with bit-score and E-value evaluated according to the sequence background frequencies parameterizable output filter for low complexity repeats r...2922 days ago
- ...your reads. Cutadapt helps with these trimming tasks by finding the adapter or primer sequences in an error-tolerant way. It can also modify and filter reads in various ways. Adapte...
2912 days ago
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Pages
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a perl filter to colorize and...pand) gcc diagnostic messages. gccfilter is particularly aimed at g++...xt::Tepl::Runtime - Basic runtime filters for Text::Tepl theory/pod-s...l Module for creating Pod to Wiki filters. jimdigriz/freeradius-oauth...2492 days ago
Awesome perl frameworks, libraries and software - PART 3
... - Development tree of Master High Availability Manager and tools for MySQL (MHA), Manager part yaoweibin/ngx_http_substitutions_filter_module - a filter module which can do both regu...2492 days ago
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Top-level pages
Commercial and public next-gen-seq (NGS) software
...f, ace and bowtie map files, clean and filter contigs, look for snps and indels., filter snps, do statistics for: read...of the alignments. Spaced seed intial filter, then NW dynamic algorithm to...quence. Highly repetitive elements are filtered out by ignoring those kmer...3516 days ago
Software packages for next gen sequence analysis
...ulate very finely the sensitivity of the alignments. Spaced seed intial filter, then NW dynamic algorithm to...n reads to the finished genome sequence. Highly repetitive elements are filtered out by ignoring those kmer...3240 days ago
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Wire posts
News
Interactive Market Intelligence
...s tool for the life science tools industry.Superior to traditional PDF and PowerPoint reports, Interactive Market Intelligence allows end-users to filter, create and export literally...3391 days ago
Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
...nd Methyl-Seq analysis. Each workflow includes a quality assessment and filter section, followed by a workfl...e will show a brief glimpse of an elaborate pipeline that aligns reads, filters poor-quality matches, comput...3009 days ago
Bio-Scripts
- ...use strict; use Getopt::Long; use Bio::SeqIO; my $fasta_file; my $filter_length; GetOptions("fasta_file=s" => \$fasta_file, "length_filter=i" => \$filter_length); die...
2702 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2138 days ago
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Tags
- This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarshewski, Gen...
Tags: Bioinformatics, Analysis, Assembly, Genome, Multigenome, Metagenome, Filter
2607 days ago
SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs
The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short (Illumina) and long (ONT and PacBio) reads. Descr...Tags: SneakySnake, Fast, Accurate, Universal, Genome, Pre-Alignment, Filter, CPUs, GPUs, FPGAs
1230 days ago
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Comments
- ...sp; Similar to grep command, filter for features including or exc...nbsp; Advanced feature filtering using awk syntax. &nb...
1518 days ago
- ...tput file name [default : mashmap.out] -k <value>, --kmer <value> kmer size <= 16 [default : 16] -f <value>, --filter_mode <value> filter modes in mashmap: 'map', 'one...
2120 days ago
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