Results for "Filters"
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pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Com...2194 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...iltering k-mer hashes and FastQ/A files: kmer: Produces a k-mer hash containing only k-mers within specified coverage and GC tolerances. seq: Filters a sequence file based on whet...2002 days ago
nanofilt: Filtering and trimming of long read sequencing data
Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and mapping https://github.com/wdecoster/nanofilt2127 days ago
FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Calcu...her tools Fully user-configurable filtering (including which filters to use and their thresholds) Option to use filters identical to ICGC recommendat...1184 days ago
