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Structural variation: the hidden genomic treasure
...mologous end‐joining and deoxyribonucleic acid (DNA) replication‐related fork stalling and template switchi...ation (NAHR), nonhomologous end‐joining (NHEJ) and DNA replication‐based fork stalling and template switchi...2701 days ago
Install ImageMagick from Unix Source
...for unistd.h... (cached) yeschecking for sys/param.h... yeschecking for getpagesize... yeschecking for working mmap... yeschecking vfork.h usability... nochecking vfork.h presence... nochecking for...2144 days ago
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Public Databases for Bioinformatics !
...atterns: # gzip a bunch of files parallel gzip -- *.FILESTOGZIP # fork example in python: (for more..."output.txt", "w") ) pids = [] for i in xrange(NPROC): pid = os.fork() if pid == 0: w...1138 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is cur...2913 days ago
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Awesome perl frameworks, libraries and software - PART 2
...earchable on the Web SoylentNews/rehash - Forked from Slashcode, rehash is t...e does inline-eval of Perl scripts to avoid any forking. degtyarev-dm/mojolicious...sp;- (perl) Object oriented simple interface to fork() dwimperl/dwimperl-linux&nb...2493 days ago
Awesome perl frameworks, libraries and software - PART 4
...dl-irssi - A community-driven fork of autodl-irssi yoshiki/mark...vent driven connection manager, preforking workers justintime/nagios...n as Plack::Server::Standalone::Prefork::Server::Starter dolmen/gith...bobthecow/PHP-HTML.mode - A fork of Coda 1.x's PHP-HTML syntax...2493 days ago
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Awesome perl frameworks, libraries and software - PART 1
...- Starman is a high-performance preforking Perl PSGI web server roni...;- japanese perl advent calendar - fork 禁止 Perl-Toolchain-Gang/ExtUt...0 for Perl wireghoul/doona - Fork of Bruteforce Exploit Detecto...mething. TJC/Flickr-API2 - A fork of Flickr::API from Perl's CP...2488 days ago
Parallel Processing with Perl !
...way is using perl threads and forks. Knowing how these threads and forks work is very important befor...e inclined towards using perl fork than perl threads. One of th...it!! One big disadvantage of forking is its very difficult to s...Instead, I would suggest each fork writing to a separate file an...2078 days ago
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Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follows a bank queuing model. Imagine the line being the data and bank-tellers the parallel workers. MCE enhances that model by adding the ability to chunk the next n elements from the in...Tags: Bioinformatics, Programming, Perl, MCE, Parallel, Core, Thread, Fork
2650 days ago
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Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1949 days ago
- Canu is one of the best de novo assemblers available for long reads - it’s a fork and updated version of the Celera assembler that was used to assemble the human genome....
2174 days ago
