Results for "Format"
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Bioinformatics tools for telomere to telomere assembly !
...e assemblies in conjunction with k-mer count information from raw, short-read seque...nnotating structural variant (SV) calls in VCF format (Aaron Wenger)● JumboDB&...s-share-stellar-science-career-advice-and-bioinformatics-tools-at-smrt-leiden-2021/...992 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...butes. FastQ is the most common read file format since this is what the Illumi...heck the qualiy with fastQC.Scripthttps://bioinformaticsonline.com/snippets/view/42...om/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/gapfiller/ IMAG...1205 days ago
Frequently used bioinformatics tools for viral genome analysis !
...E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28....ysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: K...SAMtools: The Sequence Alignment/Map format and SAMtools. Li, H. et al. B...1047 days ago
Basic Structure of Snakemake Pipeline Run !
...ing python scripts called by the snakemake formula. config.json = json format file with extra parameters for our snakemake file to use. cluster.json = json format file with specification for r...934 days ago
Useful Bioinformatics Analysis Tools !
...ion of FASTQ files, Bioinformatics, 2014; 30(15):2213&nd...aw sequencing data, Bioinformatics, 2018; 34(16):2748&nd...k -mer statistics, Bioinformatics, 2017; 33(17):2759&nd...NA sequencing data, Bioinformatics, 2019; 35(12):2043&nd...864 days ago
- ...of Slurm. sinfo View information about SLURM nodes and partitions. squeue View information about jobs located in the...h 3. Query job informationList all currently submitte...1: sacct -j 2831 --format="JobID,JobName,State,Start,En...
669 days ago
Common steps for reads mapping !
...wn indexing tools. Prepare the read data: The reads should be in a format that is compatible with the m...y involves specifying the input data, reference genome, and output file format. Evaluate the mapping re...423 days ago
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